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IBASAM

A demo-genetic individual-based model for Atlantic salmon populations

ibasam

What is IBASAM?

IBASAM (Individual Based Atlantic Salmon Model) is an individual-based demo-genetic model developed to simulate S. salar population dynamics in southern European populations.

IBASAM is a cohesive and novel tool to assess the effect of potential stressors on evolutionary demography of Atlantic salmon. It includes a demo-genetic structure coupled with the explicit representation of individual variability and complex life histories.

More detailed explanations (processes, installation procedure,…), are provided in the Wiki.

Contributors

Cyril Piou (CIRAD, CBGP, Montpellier).
Mathieu Buoro (INRA, Ecobiop, St Pée s/ Nivelle).
Etienne Prévost (INRA, Ecobiop, St Pée s/ Nivelle).
Julien Papaïx (INRA, Biosp, Avignon).

Sponsor

This work is financed under the AFB-INRA conventions.

References

Piou, C., Taylor, M. H., Papaïx, J., & Prévost, E. (2015). Modelling the interactive effects of selective fishing and environmental change on Atlantic salmon demogenetics. Journal of Applied Ecology, 52(6), 1629-1637. Link

Piou, C., Prévost, E. (2013). Contrasting effects of climate change in continental vs. oceanic environments on population persistence and microevolution of Atlantic salmon. Global Change Biology, 19 (3) : 711-723. Link

Piou, C. & Prévost, E. (2012) A demo-genetic individual-based model for Atlantic salmon populations: Model structure, parameterization and sensitivity. Ecological Modelling, 231, 37–52. Link

License

This project is licensed under the terms of the GNU General Public License GPLV3.0.